medicaid_utils package

This package puts together commonly used preprocessing, variable construction & risk adjustment algorithms for medicaid data.

Subpackages

• medicaid_utils.adapted_algorithms package
  • Subpackages
    • medicaid_utils.adapted_algorithms.py_betos package
      • Submodules
      • medicaid_utils.adapted_algorithms.py_betos.betos_proc_codes module
    • medicaid_utils.adapted_algorithms.py_cdpsmrx package
      • Submodules
      • medicaid_utils.adapted_algorithms.py_cdpsmrx.cdps_rx_risk_adjustment module
    • medicaid_utils.adapted_algorithms.py_ed_pqi package
      • Submodules
      • medicaid_utils.adapted_algorithms.py_ed_pqi.ed_pqi module
    • medicaid_utils.adapted_algorithms.py_elixhauser package
      • Submodules
      • medicaid_utils.adapted_algorithms.py_elixhauser.elixhauser_comorbidity module
    • medicaid_utils.adapted_algorithms.py_ip_pqi package
      • Submodules
      • medicaid_utils.adapted_algorithms.py_ip_pqi.data_generation module
      • medicaid_utils.adapted_algorithms.py_ip_pqi.prevention_quality_indicators module
    • medicaid_utils.adapted_algorithms.py_low_value_care package
      • Submodules
      • medicaid_utils.adapted_algorithms.py_low_value_care.low_value_care module
    • medicaid_utils.adapted_algorithms.py_nyu_billings package
      • Submodules
      • medicaid_utils.adapted_algorithms.py_nyu_billings.billings_ed module
    • medicaid_utils.adapted_algorithms.py_pmca package
      • Submodules
      • medicaid_utils.adapted_algorithms.py_pmca.pmca module
• medicaid_utils.common_utils package
  • Submodules
  • medicaid_utils.common_utils.dataframe_utils module
    • convert_ddcols_to_datetime()
    • copy_ddcols()
    • export()
    • fix_index()
    • get_first_day_gap()
    • get_reduced_column_names()
    • prepare_dtypes_for_csv()
    • safe_convert_int_to_str()
    • sas_to_pandas()
    • toggle_datetime_string()
  • medicaid_utils.common_utils.links module
    • get_max_parquet_loc()
    • get_taf_parquet_loc()
  • medicaid_utils.common_utils.recipes module
    • convert_to_int_str()
    • is_number()
    • log_assert()
    • remove_ignore_if_not_exists()
    • remove_tail_dot_zeros()
    • setup_logger()
  • medicaid_utils.common_utils.stats_utils module
    • color_positive_green()
    • compute_contingency_table()
    • compute_descriptives()
    • compute_missing_stats()
    • compute_t_stats()
    • cramers_corrected_stat()
    • get_cont_table_statewise()
    • get_contingency_table()
    • get_covar_plots()
    • get_descriptives()
    • get_missingness_stats()
    • get_phi()
    • get_ranksum_table()
    • get_ranksum_table_statewise()
    • get_utilisation_histograms()
  • medicaid_utils.common_utils.usps_address module
    • AddressStandardizationWebTool
      • AddressStandardizationWebTool.api
      • AddressStandardizationWebTool.get_standardized_address()
    • USPSAddress
      • USPSAddress.original()
      • USPSAddress.standardized()
      • USPSAddress.zipcode()
    • USPSShippingAPI
      • USPSShippingAPI.send_request()
      • USPSShippingAPI.url
    • dump_xml()
    • get_text()
• medicaid_utils.filters package
  • Subpackages
    • medicaid_utils.filters.claims package
      • Submodules
      • medicaid_utils.filters.claims.dx_and_proc module
      • medicaid_utils.filters.claims.rx module
    • medicaid_utils.filters.patients package
      • Submodules
      • medicaid_utils.filters.patients.cohort_extraction module
• medicaid_utils.other_datasets package
  • Submodules
  • medicaid_utils.other_datasets.fqhc module
    • generate_oscar_fqhc_npis()
    • get_file_name_dict()
    • get_fqhc_crosswalk()
  • medicaid_utils.other_datasets.hcris module
    • clean_address()
    • clean_hclinic_name()
    • clean_zip()
    • combine_and_clean_hcris_files()
    • compute_basic_match_purity()
    • compute_door_no_info()
    • compute_match_purity()
    • create_npi_fqhc_crosswalk()
    • filter_partial_matches()
    • flatten_nppes_query_result()
    • fuzzy_match()
    • get_taxonomies()
    • nppes_api_requests()
    • process_address_columns()
    • standardize_addresses()
    • street_address()
  • medicaid_utils.other_datasets.npi module
    • cleanup_raw_npi_files()
    • generate_npi_taxonomy_mappings()
    • generate_oscar_fqhc_npis()
    • wide_to_long_nppes_taxonomy_file()
  • medicaid_utils.other_datasets.uds module
    • clean_address()
    • clean_hclinic_name()
    • clean_zip()
    • combine_and_clean_uds_files()
    • combine_uds_fqhc_npi_crosswalks()
    • compute_basic_match_purity()
    • compute_door_no_info()
    • compute_match_purity()
    • create_npi_fqhc_crosswalk()
    • filter_partial_matches()
    • flatten_nppes_query_result()
    • fuzzy_match()
    • generate_and_combine_fqhc_npi_crosswalks()
    • generate_bhcmisid_fqhc_crosswalk()
    • generate_oscar_fqhc_npis()
    • get_file_name_dict()
    • get_taxonomies()
    • nppes_api_requests()
    • process_address_columns()
    • standardize_addresses()
    • street_address()
  • medicaid_utils.other_datasets.zip module
    • generate_zip_pcsa_ruca_crosswalk()
    • pool_zipcode_pcsa_datasets()
• medicaid_utils.preprocessing package
  • Submodules
  • medicaid_utils.preprocessing.max_cc module
    • MAXCC
      • MAXCC.agg_conditions()
      • MAXCC.get_chronic_conditions()
  • medicaid_utils.preprocessing.max_file module
    • MAXFile
      • MAXFile.add_gender()
      • MAXFile.cache_results()
      • MAXFile.calculate_payment()
      • MAXFile.clean()
      • MAXFile.clean_diag_codes()
      • MAXFile.clean_proc_codes()
      • MAXFile.export()
      • MAXFile.flag_ed_use()
      • MAXFile.get_claim_instance()
      • MAXFile.pq_export()
      • MAXFile.preprocess()
      • MAXFile.process_date_cols()
  • medicaid_utils.preprocessing.max_ip module
    • MAXIP
      • MAXIP.clean()
      • MAXIP.flag_common_exclusions()
      • MAXIP.flag_duplicates()
      • MAXIP.flag_ip_overlaps()
      • MAXIP.preprocess()
  • medicaid_utils.preprocessing.max_ot module
    • MAXOT
      • MAXOT.add_ot_flags()
      • MAXOT.clean()
      • MAXOT.find_ot_ip_overlaps()
      • MAXOT.flag_common_exclusions()
      • MAXOT.flag_dental()
      • MAXOT.flag_duplicates()
      • MAXOT.flag_em()
      • MAXOT.flag_ip_overlaps_and_ed()
      • MAXOT.flag_transport()
      • MAXOT.preprocess()
  • medicaid_utils.preprocessing.max_ps module
    • MAXPS
      • MAXPS.add_eligibility_status_columns()
      • MAXPS.clean()
      • MAXPS.flag_common_exclusions()
      • MAXPS.flag_duals()
      • MAXPS.flag_restricted_benefits()
      • MAXPS.flag_rural()
      • MAXPS.flag_tanf()
      • MAXPS.preprocess()
  • medicaid_utils.preprocessing.taf_file module
    • TAFFile
      • TAFFile.cache_results()
      • TAFFile.clean()
      • TAFFile.clean_codes()
      • TAFFile.clean_diag_codes()
      • TAFFile.clean_ndc_codes()
      • TAFFile.clean_proc_codes()
      • TAFFile.export()
      • TAFFile.flag_duplicates()
      • TAFFile.flag_ffs_and_encounter_claims()
      • TAFFile.gather_bene_level_diag_ndc_codes()
      • TAFFile.get_claim_instance()
      • TAFFile.pq_export()
      • TAFFile.preprocess()
      • TAFFile.process_date_cols()
  • medicaid_utils.preprocessing.taf_ip module
    • TAFIP
      • TAFIP.clean()
      • TAFIP.flag_common_exclusions()
      • TAFIP.preprocess()
  • medicaid_utils.preprocessing.taf_lt module
    • TAFLT
      • TAFLT.clean()
      • TAFLT.preprocess()
  • medicaid_utils.preprocessing.taf_ot module
    • TAFOT
      • TAFOT.clean()
      • TAFOT.flag_common_exclusions()
      • TAFOT.preprocess()
  • medicaid_utils.preprocessing.taf_ps module
    • TAFPS
      • TAFPS.add_gender()
      • TAFPS.add_mas_boe()
      • TAFPS.add_risk_adjustment_scores()
      • TAFPS.clean()
      • TAFPS.compute_enrollment_gaps()
      • TAFPS.flag_common_exclusions()
      • TAFPS.flag_dual()
      • TAFPS.flag_ffs_months()
      • TAFPS.flag_managed_care_months()
      • TAFPS.flag_medicaid_enrolled_months()
      • TAFPS.flag_restricted_benefits()
      • TAFPS.flag_rural()
      • TAFPS.flag_tanf()
      • TAFPS.gather_bene_level_diag_ndc_codes()
      • TAFPS.preprocess()
  • medicaid_utils.preprocessing.taf_rx module
    • TAFRX
      • TAFRX.clean()
• medicaid_utils.topics package
  • Subpackages
    • medicaid_utils.topics.obgyn package
      • Submodules
      • medicaid_utils.topics.obgyn.cohort_indicators module
      • medicaid_utils.topics.obgyn.comorbities module
      • medicaid_utils.topics.obgyn.hospitalization module
    • medicaid_utils.topics.oud package
      • Submodules
      • medicaid_utils.topics.oud.care_settings module
      • medicaid_utils.topics.oud.cooccurring_conditions module
      • medicaid_utils.topics.oud.medication_and_behavioral_health module